Computational Screening of Toxicity, Drug-like Molecule, and Bioactivity from Green Tea Phytochemical as Antiviral Candidate

https://doi.org/10.24036/sainstek/vol1-iss02/8

Authors

  • Priscilla Listiyani Computational Virology Research Unit, Molecular Biology and Genetics Division, Generasi Biologi Indonesia Foundation, Gresik Indonesia.
  • Santika Lusia Utami Faculty of Biology, Universitas Gadjah Mada, Yogyakarta, Indonesia.
  • Dora Dayu Rahma Turista Educational Biology Department, Faculty of Teacher Training and Education, Mulawarman University, Samarinda, Indonesia.
  • Arbi Wiguna Zoology Division, Generasi Biologi Indonesia Foundation, Gresik, Indonesia.
  • Arini Wijayanti Department of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, United States.
  • Yuanita Rachmawati Department of Biology, Faculty of Science and Technology, UIN Sunan Ampel Surabaya, Surabaya, Indonesia.
  • Alyaa Farrah Dibha Chemistry Department, Faculty of Mathematics and Natural Sciences, Brawijaya University, Malang, Indonesia.
  • Thobib Hasan Department of Biology, Faculty of Mathematics and Natural Sciences, IPB University, Bogor, Indonesia.
  • Muhammad Aldino Hafidzhah Department of Bioinformatics, School of Life Sciences, Indonesia International Institute for Life-Sciences, East Jakarta, Indonesia.
  • Renadya Maulani Wijaya Department of Bioinformatics, School of Life Sciences, Indonesia International Institute for Life-Sciences, East Jakarta, Indonesia.
  • Agus Mohammad Hikam Faculty of Mathematics and Natural Sciences, Universitas Islam Malang, Malang, Indonesia.
  • Ahmad Affan Ali Murtadlo Computational Virology Research Unit, Molecular Biology and Genetics Division, Generasi Biologi Indonesia Foundation, Gresik Indonesia.
  • Muhammad Badrut Tamam Department of Biology, Faculty of Sciences and Technology, Universitas Muhammadiyah Lamongan, Lamongan, Indonesia
  • Sri Wahyuningsih Faculty of Biology, Universitas Gadjah Mada, Yogyakarta, Indonesia.
  • Nelson Chandra Department of Bioinformatics, School of Life Sciences, Indonesia International Institute for Life-Sciences, East Jakarta, Indonesia.
  • Sin War Naw Department of Chemistry, Myitkyina University, Myitkyina, Myanmar.

Keywords:

Antiviral, Computational Screening, Bioactivity, Green Tea, Phytochemical

Abstract

Viruses are obligate intracellular parasites because they can infect cells and hijack the gene expression process in host cells for the replication of viral genetic material. The mechanism of the viral life cycle is generally divided into three stages such as viral entry, genome replication, budding, and release. Several viruses can inhibit interferon signaling through the JAK/STAT pathway such as human cytomegalovirus (HCMV), HIV-1, murine hepatitis virus (MHV), severe acute respiratory syndrome coronavirus (SARS-CoV-2), & vaccinia virus (VACV). Antiviral drugs can be developed by studying how viruses evade the immune response, several drugs have been discovered but most of them are synthetic compounds that produce the use effect. Screening of drug candidate compounds can be carried out on a specific natural ingredient such as green tea used in this study. Scientific evidence of compounds from green tea as an antiviral agent is very little, this study is important because it is to screen the potential of compounds from green tea as an antiviral agent through computational approach. Green Tea phytochemical compounds are predicted to be antiviral based on in silico analysis. Antiviral candidate are EGCG, ECG, EGC, EC, & Catechin, they are drug-like molecules and have positive probabilities as antiviral agents.

References

Xu J, Xu Z, Zheng W. A Review of the Antiviral Role of Green Tea Catechins. Molecules. 2017; 22(8): 1337. DOI: 10.3390/molecules22081337.

Mhatre S, Srivastava T, Naik S, Patravale V. Antiviral activity of green tea and black tea polyphenols in prophylaxis and treatment of COVID-19: A review. Phytomedicine. 2021; 85: 153286. DOI: 10.1016/j.phymed.2020.

Ansori ANM, Fadholly A, Proboningrat A, Antonius Y, Hayaza S, Susilo RJ, Inayatillah B, Sibero MT, Naw SW, Posa GAV, Sucipto TH, Soegijanto S. Novel Antiviral Investigation of Annona squamosa Leaf Extract against the Dengue Virus Type-2: In vitro Study. Phcog J. 2021; 13(2): 456-462. DOI: 10.5530/pj.2021.13.58

Ansori AN, Kharisma VD, Parikesit AA, Dian FA, Probojati RT, Rebezov M, Scherbakov P, Burkov P, Zhdanova G, Mikhalev A, Antonius Y, Pratama MRF, Sumantri NI, Sucipto TH, Zainul R. Bioactive Compounds from Mangosteen (Garcinia mangostana L.) as an Antiviral Agent via Dual Inhibitor Mechanism against SARS-CoV- 2: An In Silico Approach. Phcog J. 2022; 14(1): 85-90. DOI: 10.5530/pj.2022.14.12

Wijaya RM, Hafidzhah MA, Kharisma VD, Ansori ANM, Parikesit AP. COVID-19 In Silico Drug with Zingiber officinale Natural Product Compound Library Targeting the Mpro Protein. Makara J Sci. 2021; 25(3): 5. DOI: 10.7454/mss.v25i3.1244

Fahmi M, Kharisma VD, Ansori ANM, Ito M. Retrieval and Investigation of Data on SARS-CoV-2 and COVID-19 Using Bioinformatics Approach. Adv Exp Med Biol. 2021; 1318: 839-857. DOI: 10.1007/978-3-030-63761-3_47.

Winarni D, Husna FN, Syadzha MF, Susilo RJK, Hayaza S, Ansori ANM, Alamsjah MA, Amin MNG, Wulandari PAC, Pudjiastuti P, Awang K. Topical Administration Effect of Sargassum duplicatum and Garcinia mangostana Extracts Combination on Open Wound Healing Process in Diabetic Mice. Scientifica. 2022; 2022: 9700794. DOI: 10.1155/2022/9700794.

Khairullah AR, Solikhah TI, Ansori ANM, Hanisia RH, Puspitarani GA, Fadholly A, Ramandinianto SC. Medicinal importance of Kaempferia galanga L. (Zingiberaceae): A comprehensive review. J Herbmed Pharmacol. 2021; 10: 281-288. DOI: 10.34172/jhp.2021.32

Kharisma VD, Probojati RT, Murtadlo AAA, Ansori ANM, Antonius Y, Tamam MB. Revealing Potency of Bioactive Compounds as Inhibitor of Dengue Virus (DENV) NS2B/NS3 Protease from Sweet Potato (Ipomoea batatas L.) Leaves. Indian J Forensic Med Toxicol. 2020; 15(1): 1627–1632. DOI: 10.37506/ijfmt.v15i1.13644

Kharisma VD, Agatha A, Ansori ANM, Widyananda MH, Rizky WC, Dings TGA, Derkho M, Lykasova I, Antonius Y, Rosadi I, Zainul R. Herbal combination from Moringa oleifera Lam. and Curcuma longa L. as SARS-CoV-2 antiviral via dual inhibitor pathway: A viroinformatics approach. J Pharm Pharmacogn Res. 2022; 10(1): 138-146.

Ansori ANM, Susilo RJK, Fadholly A, Hayaza S, Nugraha AP, Husen SA. Antidiabetes type 2 phytomedicine: Mangosteen (Garcinia Mangostana l.)-A review. Biochem Cell Arch. 2020; 20: 3173-3177. DOI: 10.35124/bca.2020.20.S1.3173

Khairullah AR, Solikhah TI, Ansori ANM, Fadholly A, Ramandinianto SC, Ansharieta R, Widodo A, Riwu KHP, Putri N, Proboningrat A, Kusala MKJ, Rendragraha BW, Putra ARS, Anshori A. A Review of an Important Medicinal Plant: Alpinia galanga (L.) Willd. Sys Rev Pharm. 2020; 11(10): 387-395. DOI: 10.31838/srp.2020.10.62

Kharisma VD, Widyananda MH, Ansori ANM, Nege AS, Naw SW, Nugraha AP Tea catechin as antiviral agent via apoptosis agonist and triple inhibitor mechanism against HIV-1 infection: A bioinformatics approach. J Pharm Pharmacogn Res. 9(4): 435-445.

Kharisma VD, Ansori ANM, Widyananda MH, Utami SL, Nugraha AP. Molecular simulation: The potency of conserved region on E6 HPV-16 as a binding target of black tea compounds against cervical cancer. Biochem Cell Arch. 2020; 20: 2795-2802. DOI: 10.35124/bca.2020.20.S1.2795

Widyananda MH, Pratama SK, Samoedra RS, Sari FN, Kharisma VD, Ansori ANM, Antonius Y (2021) Molecular docking study of sea urchin (Arbacia lixula) peptides as multi-target inhibitor for non-small cell lung cancer (NSCLC) associated proteins. J Pharm Pharmacogn Res 9(4): 484–496.

Tacharina MR, Ansori ANM, Plumeriastuti H, Kusnoto , Kurnijasanti R, Hestianah EP. Beneficial effect of grinting grass (Cynodon dactylon) on the streptozotocin induced diabetes mellitus in the mice. Indian Vet J. 2020; 97(4): 35-38.

Wahyuni DK, Ansori ANM, Vidiyanti F. GC-MS analysis of phytocomponents in methanolic extracts of leaf-derived callus of Justicia gendarussa Burm.f. Biosci Res. 2017;14(3):668-677.

Husen SA, Winarni D, Salamun, Ansori ANM, Susilo RJK, Hayaza S. Hepatoprotective Effect of Gamma-mangostin for Amelioration of Impaired Liver Structure and Function in Streptozotocin-induced Diabetic Mice. IOP Conf Ser: Earth Env Sci. 2019; 217(1): 012031. DOI: 10.1088/1755-1315/217/1/012031

Ansori ANM, Kusala MKJ, Irawan H, Putri N, Fadholly A, Proboningrat A, Rukmana Siti, Karni I, Anisa AK, Adrianto H. Citrus reticulata extract as biocides to control Aedes aegypti, the vector of dengue. Biosci Res. 2018; 15(3): 1661-1665.

Ansori ANM, Sucipto TH, Chylichcova S, Padmi H, Kharisma VD, Widyananda MH, Ullah E, Gumenyuk O, Prasedya ES, Sibero MT, Bratishko N, Zainul R. Macroalgae Bioactive Compounds for the Potential Antiviral of SARS-CoV-2: An In Silico Study. Journal of Pure and Applied Microbiology. 2022; 16(2): 1018-1027. DOI: 10.22207/JPAM.16.2.26

Fadholly A, Ansori ANM, Utomo B. Anticancer Effect of Naringin on Human Colon Cancer (WiDr Cells): In Vitro Study. Research Journal of Pharmacy and Technology. 2022; 15(2): 885-888. DOI: 10.52711/0974-360X.2022.00148

Dibha AF, Wahyuningsih S, Ansori ANM, Kharisma VD, Widyananda MH, Parikesit AA, Sibero MT, Probojati RT, Murtadlo AAA, Trinugroho JP, Sucipto TH, Turista DDR, Rosadi I, Ullah ME, Jakhmola V, Zainul R. Utilization of Secondary Metabolites in Algae Kappaphycus alvarezii as a Breast Cancer Drug with a Computational Method. Pharmacognosy Journal. 2022; 14(3): 536-543. DOI: 10.5530/pj.2022.14.68

Aini NS, Ansori ANM, Kharisma VD, Syadzha MF, Widyananda MH, Murtadlo AA, et al. Potential Roles of Purslane (Portulaca oleracea L.) as Antimetabolic Syndrome: A Review. Pharmacognosy Journal. 2022; 14(3): 710-714. DOI: 10.5530/pj.2022.14.90

Listiyani P, Kharisma VD, Ansori AN, Widyananda MH, Probojati RT, Murtadlo AA, et al. In Silico Phytochemical Compounds Screening of Allium sativum Targeting the Mpro of SARS-CoV-2. Pharmacognosy Journal. 2022; 14(3): 604-609. DOI: 10.5530/pj.2022.14.78

Ansori ANM, Fadholly A, Hayaza S, Susilo RJK, Inayatillah B, Winarni D, Husen SA. A Review on Medicinal Properties of Mangosteen (Garcinia mangostana L.). Res J Pharm Techol. 2020; 13(2):974-982. doi: 10.5958/0974-360X.2020.00182.1

Husen SA, Wahyuningsih SPA, Ansori ANM, Hayaza S, Susilo RJK, Winarni D, Punnapayak H, Darmanto W. Antioxidant Potency of Okra (Abelmoschus esculentus Moench) Pods Extract on SOD Level and Tissue Glucose Tolerance in Diabetic Mice. Res J Pharm Technol. 12(12): 5683. doi: 10.5958/0974-360X.2019.00983.1

Husen SA, Setyawan MF, Syadzha MF, Susilo RJK, Hayaza S, Ansori ANM, Alamsjah MA, Ilmi ZN, Wulandari PAC, Pudjiastuti P, Awang P, Winarni D. A Novel Therapeutic effects of Sargassum ilicifolium Alginate and Okra (Abelmoschus esculentus) Pods extracts on Open wound healing process in Diabetic Mice. Research J. Pharm. and Tech 2020; 13(6): 2764-2770. doi: 10.5958/0974-360X.2020.00491.6

Kharisma VD, Kharisma SD, Ansori ANM, Kurniawan HP, Witaningrum AM, Fadholly A, Tacharina MR. Antiretroviral Effect Simulation from Black Tea (Camellia sinensis) via Dual Inhibitors Mechanism in HIV-1 and its Social Perspective in Indonesia. Res J Pharm Technol. 2021; 14(1): 455-460. doi: 10.5958/0974-360X.2021.00083.4

Fadholly A, Ansori ANM, Kharisma VD, Rahmahani J, Tacharina MR. Immunobioinformatics of Rabies Virus in Various Countries of Asia: Glycoprotein Gene. Res J Pharm Technol. 2021; 14(2): 883-886. doi: 10.5958/0974-360X.2021.00157.8

Ansori ANM, Fadholly A, Proboningrat A, Hayaza S, Susilo RJK, Naw SW, Posa GAV, Yusrizal YF, Sibero MT, Sucipto TH, Soegijanto S. In vitro antiviral activity of Pinus merkusii (Pinaceae) stem bark and cone against dengue virus type-2 (DENV-2). Res J Pharm Technol. 2021; 14(7):3705-8. doi: 10.52711/0974-360X.2021.00641

Ansori ANM, Kharisma VD, Fadholly A, Tacharina MR, Antonius Y, Parikesit AA. Severe Acute Respiratory Syndrome Coronavirus-2 Emergence and Its Treatment with Alternative Medicines: A Review. Research Journal of Pharmacy and Technology 2021; 14(10):5551-7. doi: 10.52711/0974-360X.2021.00967

Husen SA, Ansori ANM, Hayaza S, Susilo RJK, Zuraidah AA, Winarni D, Punnapayak H, Darmanto W. Therapeutic Effect of Okra (Abelmoschus esculentus Moench) Pods Extract on Streptozotocin-Induced Type-2 Diabetic Mice. Res J Pharm Technol. 2019; 12(8):3703-3708. doi: 10.5958/0974-360X.2019.00633.4

Ansori ANM, Kharisma VD, Solikhah TI. Medicinal properties of Muntingia calabura L.: A Review. Res J Pharm Technol. 2021; 14(8):4509-2. doi: 10.52711/0974-360X.2021.00784

Proboningrat A, Kharisma VD, Ansori ANM, Rahmawati R, Fadholly A, Posa GAV, Sudjarwo SA, Rantam FA, Achmad AB. In silico Study of Natural inhibitors for Human papillomavirus-18 E6 protein. Res J Pharm Technol. 2022; 15(3):1251-6. doi: 10.52711/0974-360X.2022.00209

Kharisma VD, Ansori ANM, Jakhmola V, Rizky WC, Widyananda MH, Probojati RT, Murtadlo AAA, Rebezov M, Scherbakov P, Burkov P, Matrosova Y, Romanov A, Sihombing MAEM, Antonius Y, Zainul R. Multi-strain human papillomavirus (HPV) vaccine innovation via computational study: A mini review. Res J Pharm Technol. 2022; 15(8).

Naw SW, Probojati RT, Murtadlo, AAA, Ullah, ME. (2022). Computational Drug Design Study of Curcuma longa L. Compound as HPV-16 Antiviral Candidate Against Cervical Cancer. SAINSTEK International Journal on Applied Science, Advanced Technology and Informatics, 1(01), 1–6.

Ullah ME, Probojati RT, Murtadlo AAA, Tamam MB, Naw WR. Revealing of Antiinflamatory Agent from Zingiber officinale var. Roscoe via IKK-B Inhibitor Mechanism through In Silico Simulation. SAINSTEK International Journal on Applied Science, Advanced Technology and Informatics. 2022; 1(01): 14–19.

Ullah ME, Naw WR, Murtadlo AAA, Tamam MB, Probojati RT. Molecular Mechanism of Black Tea (Camellia sinensis) as SARS-CoV-2 Spike Glycoprotein Inhibitor through Computational Approach. SAINSTEK International Journal on Applied Science, Advanced Technology and Informatics. 2022; 1(01): 20–25.

Probojati RT, Murtadlo AAA, Ullah ME, Naw WR, Turista DDR. Molecular Docking Study of HIV-1 Antiretroviral Candidate via Reverse Transcriptase Inhibitor from Zingiber officinale var. Roscoe. SAINSTEK International Journal on Applied Science, Advanced Technology and Informatics. 2022; 1(01): 26–31.

Tamam MB, Naw WR, Ullah ME, Probojati RT, Murtadlo AAA, Turista DDR. Virtual Screening of Kaempferia galanga L. Bioactive Compounds as HPV-16 Antiviral Mechanism Through E6 Inhibitor Activity. SAINSTEK International Journal on Applied Science, Advanced Technology and Informatics. 2022; 1(01): 7–13.

Published

2022-12-27

How to Cite

Listiyani, P., Utami, S. L., Turista, D. D. R., Wiguna, A., Wijayanti, A., Rachmawati, Y., Dibha, A. F., Hasan, T., Hafidzhah, M. A., Wijaya, R. M., Hikam, A. M., Murtadlo, A. A. A., Tamam, M. B., Wahyuningsih, S., Chandra, N., & Naw, S. W. (2022). Computational Screening of Toxicity, Drug-like Molecule, and Bioactivity from Green Tea Phytochemical as Antiviral Candidate. SAINSTEK International Journal on Applied Science, Advanced Technology and Informatics, 1(02), 39–45. https://doi.org/10.24036/sainstek/vol1-iss02/8

Most read articles by the same author(s)